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Therapeutics

From a scaffold to a calibrated clearance estimate.

The molecule-side funnel, end to end. Profile a series for ADMET and compliance, optimize the leads, dock against the target with strain correction, and gate on a calibrated Phase I clearance estimate — without leaving the assistant.

predict_admetdock_with_strainlead_optimizationpredict_clinical_outcomescheck_compliancerun_molecular_dynamics

Toxicity and drug-like properties drive roughly 40 to 45 percent of clinical failures. We surface those flags in silico, before a dollar of lab spend.

One instruction

What it looks like in practice.

any MCP-compatible assistant
you Profile this scaffold for ADMET and compliance, then dock the clean candidates against EGFR.
resolved 4 analogs · ran batch_profile across 84 properties
flagged 1 hERG liability and 1 PAINS alert via check_compliance (FAVES)
docked 3 survivors with dock_with_strain · top pose −9.4 kcal/mol
gated on predict_clinical_outcomes · calibrated Phase I clearance 0.71
Benchmarked

The accuracy, stated plainly.

0.756
NovoExpert-3
Phase I AUROC
0.535
pKa v9
SAMPL7 RMSE
31
ML ADMET
models
5/22
TDC ADMET
SOTA endpoints

Pre-computed ADMET on every compound

Absorption, distribution, metabolism, excretion, and toxicity flags are already computed across 122M molecules — and predicted on demand for novel structures. No model queues, no compute allocation.

Docking with strain correction

AutoDock-GPU poses, corrected for internal ligand strain so the binding estimate survives a medicinal chemist’s scrutiny. Reference-ligand co-docking keeps the pose honest.

Lead optimization that respects the series

Scaffold-aware, property-directed optimization. Tanimoto thresholds tuned to the 0.80–0.85 sweet spot so generated analogs stay synthesizable and on-series.

A clinical-outcome gate, calibrated

NovoExpert-3 estimates Phase I clearance from physicochemical, ADMET, and target/indication features. Strong on cardiovascular and GI; we state where it is not yet validated.

Research preview

Run the molecule-side funnel on an engine you can audit.

NovoMCP is open to a small group of PIs, postdocs, and research engineers. Tell us what you are working on.